Algorithm for uniform test assembly using a maximum clique problem 107 fig. The mixed integer linear programming solver x 2 rn is the vector of structural variables a 2 rmn is the matrix of technological coef. The maximum clique problem is finding a solution that is often considered difficult, as well as graph coloring problem, traveling salesman, and so forth. The collection of problems explored here is related to the maximum clique problem and to the biclique problem. We look for a set c v that maximizes the total weight of vertices and. An integer programming problem is a mathematical programming problem in which s. This paper introduces the maximum kplex problem to the operations research community and analyzes its basic properties, including the computational complexity, mathematical programming formulations, and a polyhedral study. When the objective function and constraints are all linear in form, then it is a mixedinteger linear program milp. After establishing npcompleteness of the decision version of the problem on arbitrary graphs, an integer programming formulation is presented, followed by a polyhedral study to identify combinatorial. For constraint programming approaches, this rule has clear implications, favouring weightbased rather than degreebased heuristics. Jul 01, 2010 extended and discretized formulations for the maximum clique problem extended and discretized formulations for the maximum clique problem martins, pedro 20100701 00.
However, we need to make sure that guessing can be done in nondeterministic polynomialtime. Finding a maximum clique in an arbitrary graph siam journal. Tutorial on creating concrete ilp formulations using python. The maximum clique problem contents citeseerx penn state. Finally, exact methods could be used to help the heuristics to visit promising regions of the search space. Objective is to choose the largest clique in g formulation.
The maximum clique problem may be solved using as a subroutine an algorithm for the maximal clique listing problem, because the maximum clique must be included among all the maximal cliques. An up to date bibliography on the maximum clique and related problems is also provided. We discuss enumerative and exact algorithms, heuristics, and a. Dc programming, dca, quadratic programming, weighted cliques, semide nite programming 1 introduction the maximum weighted clique problem mwcp can be seen as the generalization of boolean quadratic programming and maximal clique problems with a cardinality constraint. We start by showing that integer programming, which is linear programming where. The isolated vertex is a maximal clique, but not a maximum clique. Given a graph g and an interdiction budget k, the maximum clique interdiction problem asks to find a subset of at most k vertices to remove from g so that the size of the maximum clique in the remaining graph is minimized. We are thus ready to write a general mathematical model for the factory planning problem, whichlooksasfollows. Integer programming formulations for the elementary. A mixed integer programming problem is a mathematical programming problem in which at least one, but not all, of the components of x. Solution the maximum clique can be done using several methods, such as.
For example, take a graph consisting of three vertices and one edge. Solution of maximum clique problem by using branch and. Reduced cost fixing optimal solution linear programming relaxation reduced cost. Common formulations of the clique problem include finding a maximum clique a clique with.
Aateachinglecturestopics in controlinteger programming. Suppose edge connects guests if they already know each other. Extended and discretized formulations for the maximum clique. This paper introduces and studies the maximum kplex problem, which arises in social network analysis and has wider applicability in several important areas employing graphbased data mining. For uniform test assembly, one of most important issues is to increase the number of assembled tests. In computer science, the clique problem is the computational problem of finding cliques subsets of vertices, all adjacent to each other, also called complete subgraphs in a graph. The optimization version of maximum clique asks for the. If x, w is feasible for the ip, then x is feasible for the fixed charge problem, and the ip cost is the same as the cost in the fixed charge problem.
This time, there are weights 2rv andd e gi ven on both theertices edges. On maximum weight clique algorithms, and how they are. Every maximum clique is a maximal clique, but the other direction isnt correct. Integer linear programming in computational biology dan gus. The maximal search is for all maximal cliques in a graph cliques that cannot be enlarged, while the maximum clique algorithms find a maximum clique a clique with the largest number of vertices. A vertex cover is a subset of v, such that every edge i. That is, we need to show that if the problem has a solu. Maximum clique algorithms differ from maximal clique algorithms e. In this thesis, we are interested in four representative clique problems. Mixed integer programming methods for supply chain optimization christos maravelias, university of wisconsin madison linear programming standard optimization problem. The maximum balanced biclique problem mbbp is the third clique problem, which. In order to prove integer programming in np, we may guess an ndimensional integer vector x and check whether x satis.
This is done through the addition of cutting planes to the linear program. Examples of such algorithms are simulated annealing, neural net works. Conflict graphs in solving integer programming problems 1 1. If there are multiple maximum cliques, one of them may be chosen arbitrarily. This modeling allows to predict all kinds of rna complex motifs including pseudoknots or crossing interactions. The resulting lp optimal solution could be a sources of useful information. Picking winners in daily fantasy sports using integer programming article submitted to informs journal on optimization. Increasingly used in computational biology in nontraditional ways. Every instance of a combinatorial optimization problem has data, a method for determining which solutions are feasible, and an objective function value for each feasible solution. The simplest one is the following edge formulation.
In this context, we present a new integer programming model for solving the maximum weighted clique problem in alignment graphs. For instance, as the maximum clique problem can be formulated as an integer programming problem, its lp relaxation can be solved easily by any lp solver. Linear integer programming types of integer programming problems pure integer programming problem. The second part is the general sdprelaxation for 01 integer programming problems. A maximum clique independent set is a maximal clique independent set that has the maximum cardinality or weight. The minimum vertex cover problem asks for a vertex cover of minimum cardinality. The maximumvertexweightedclique problem mvw consists in. We look for a set c v that maximizes the total weight of vertices and induced edges. In theoretical computer science, the subgraph isomorphism problem is a computational task in which two graphs g and h are given as input, and one must determine whether g contains a subgraph that is isomorphic to h. It is based on the application of the two standard techniques in integer programming, branch and. Mixed integer programming methods supply chain optimization. Discrete optimization solving the maximum edge weight clique problem via unconstrained quadratic programming bahram alidaee a, fred glover b, gary kochenberger c, haibo wang d a school of business, university of mississippi, united states b university of colorado at boulder, united states c school of business, university of colorado at denver, co, united states. On globally solving the maximum weighted clique problem. Maximum weight clique and maximum weight independent set solvers are often benchmarked using maximum clique problem instances, with weights allocated to vertices by taking the vertex number mod 200 plus 1.
Conflict graphs, integer programming, cliques, preprocessing. Subgraph isomorphism is a generalization of both the maximum clique problem and the problem of testing whether a graph contains a hamiltonian cycle, and is therefore npcomplete. The rst part introduces the basic principles in the single criterion case. Solving maximum clique problem for protein structure. Finding the largest clique in a graph is the clique number of the graph and is also known as the maximum clique problem mcp. The subject of this thesis is the maximum clique problem on a graph g v,e. For better understanding, we discuss this using simple examples. The maximumclique problem was discussed in the book in chapter 2. Introductionlinear programminginteger programming applications of ilp maximum clique problem a clique in a graph g v.
Integer linear programming indian statistical institute. We propose integer programming formulations for the problem, stated in different variable spaces, and derive valid inequalities to strengthen their linear programming relaxations. If we solve lp without integer constraints and get integer valued result, the result is guaranteed to be correct. The maximum clique problem consists of nding the largest cardinality of a clique. The maximum independent set problem can be formulated as the following integer programming problem. The model has been implemented using the ilog cplex callable library. Consider again the complete graph kn d v e c on n nodes. Exact solution of graph coloring problems via constraint programming and column generation stefano gualandi, federico malucelli. Integer programming really is a wonderful npcomplete problem. We discuss enumerative and exact algorithms, heuristics, and a variety of other proposed methods. Here we give some examples to illustrate the use of edge equalities. A situation giving rise to the spl problem is the lockbox location problem encountered by a firm.
The maximum weighted clique problem in the maximum weighted clique problem there is a weight associated with each vertex i. Integer linear programming, abbreviated ilp, is a versatile modeling and optimization technique. This step assembles c1 tests by solving the integer programming problem. The total weight of this maximum weight clique is called the weighted clique number of and is denoted by.
E is a subset c v such that the subgraph of g induced by those vertices is a complete graph. Suppose the vertices of the graph represent the dinner guests. Picking winners in daily fantasy sports using integer. Algorithm for uniform test assembly using a maximum clique. Math3902 operations research ii integer programming p. Ripmcp applies a maximum clique algorithm and integer programming for assembling uniform tests.
On a cliquebased integer programming formulation of vertex. An integer programming formulation is presented and basic polyhedral study of the problem is carried out. Irn, where zn is the set of all ndimensional vectors with integer components. Cliques, quasicliques and clique partitions in graphs. In this paper we present a survey of results concerning algorithms, complexity, and applications of the maximum clique problem. First, we would need a variable for each node of the graph where a variable would have the value one if and only if it is included in the maximum clique. Algorithm for uniform test assembly using a maximum. The problem of finding the largest clique in a graph is a wellknown nphard problem and is called the maximum clique. Continuous characterizations of the maximum clique problem. Solving the maximum edge weight clique problem via. Column generation in integer programming with applications.
Integer programming formulations for the elementary shortest path problem leonardotaccari dipartimento di elettronica, informazione e bioingegneria, politecnico di milano, italy abstract given a directed graph g v,a with arbitrary arc costs, the elementary shortest path problem espp consists of. Integer programming formulations for minimum spanning forest. A branchandcut implementation is discussed and computational test results on the proposed benchmark instances are also provided. Solving this integer linear integer program is equivalent to the original problem of maximum independent set, with 1 value indicating that node is in the set. In the weighted maximum clique problem, the input is an undirected graph. The method is particularly useful in early optimization courses where students have math and engineering. An up to date bibliography on the maximum clique and related problems is also. Optimization online the maximum clique interdiction problem. A maximum clique is a clique with the highest number of vertices possible. Exact solution of graph coloring problems via constraint. We get the following hardnessofapproximation result. Minimum weighted coloring of triangulated graphs, with application to maximum weight vertex packing and clique finding in arbitrary graphs. Lecture 21 maxflow mincut integer linear programming. Optimization algorithms for clique problems tel archives ouvertes.
How to find the size of maximal clique or clique number. Introduction to integer programming mit opencourseware. In this paper we introduce a new clique relaxationthe triangle kcluband its associated maximization problem the maximum triangle kclub problem. Simply stated, an integer programming problem ip is an lp in which some or all of the variables are required to be nonnegative integers. This is one of the most deeply studied problems in the graph domain and is known to be nphard so no polynomial time algorithm is expected to be found to solve it in the general case there are particular graph configurations which do have polynomial time algorithms.
Quotes of the day somebody who thinks logically is a nice. This problem has applications in many areas, such as crime detection, prevention of outbreaks of infectious. E is an input graph to maximum clique, we introduce a variable x. If x is feasible for the fixed charge problem, then x, w is feasible for the ip w is defined on the last slide, and the cost in the ip matches the cost of the fixed charge problem. In the k clique problem, the input is an undirected graph and a number k. In addition to the biclique problems, we consider an optimizationequivalent variant of the maximum clique problem. Solution of maximum clique problem by using branch and bound. Introduction to integer programming integer programming models.
An initial linear programming relaxation is solved and, when there is an integrality gap, this relaxation is strengthened using one of several tightening procedures. It is remarkably easy to write many problems as integer programs. This paper presents a column generation approach for integer programming. Integer programming problem for assembling the feasible test. This paper aims to show that constraint programming can be an efficient technique to solve a wellknown combinatorial optimization problem.
Maximum cardinality clique problem mcc consists in. We model the problem of rna complex prediction with input knowledge as a constrained maximum weight clique problem in a graph and we present an heuristic based on breakout local search to find good solutions, resulting in the tool rcpred. If wu for u e v are given node weights, then the weighted clique number ww, g is the largest of sec wu among. In addition, we designed a dedicated branch and bound algorithm for solving the maximum cardinality clique problem. This is another wellstudied combinatorial problem, which we will use as a case study for integer programming techniques later. The integrality enforcing capability is perhaps more powerful than the reader at first realizes. Solving the maximum clique problem with symmetric rankone. Pardalos 1994 for examples of applications, easy for students to. Thus, it is important to become familiar with a wide variety of di erent classes of integer programming problems. It has several different formulations depending on which cliques, and what information about the cliques, should be found. For example, here is the maximum clique problem the natural optimization variant of the clique problem as an integer linear program. Minimum weighted coloring of triangulated graphs, with. In this paper we present a new integer programming formulation for solving such clique problems.
Modeling as linear programs exercise 1 maximum clique npcomplete a clique of a graph g v, e is a subset c of v, such that every two nodes in v are joined by an edge of e. I will assume that you have read and understood section 2. Second, we consider basic approaches that have been developed for solving integer and mixed integer programming problems. A frequent use of integer variables in a model is as a zeroone variable to represent a gonogo decision. A vertices coloring is to assign a color to the vertices of a graph. Exercise 1 maximum clique npcomplete a clique of a graph g v, e is a subset c of v, such that every two nodes in v are joined by an edge of e. This problem is to delete minimum weight collection of.
The maximum size of a clique in g is called the clique number of g and will be denoted by wg simply by w when no confusion is likely to arise. Then the maximum clique will be the biggest set of guests at a dinner where everyone knew each other 4, 5. But, if some of the basic variables do not have nonnegative integer value, an additional linear constraint called the gomory constraint is generated. On maximum weight clique algorithms, and how they are evaluated. Pdf using constraint programming to solve the maximum. Integer programming formulations mit opencourseware. The simplest formulation of the maximum clique problem is the following. Jul 31, 2006 a genetic algorithm for the maximum clique problem. Express the maximum clique problem as an integer linear program. The maximum clique problem has many equivalent formulations as an integer programming problem, or as a continuous nonconvex optimization problem. To get a tractable lp programme we drop the last constraint.
Gaining such an understanding will be useful when you are later confronted with a new integer programming problem and have to determine how best to deal. A mixedinteger programming mip problem results when some of the variables in your model are realvalued can take on fractional values and some of the variables are integervalued. Z n how can we model the maximum clique problem as an integer program. This study proposes a new algorithm, ripmcp, to improve the number of assembled tests. In the maximum clique problem, the input is an undirected graph, and the output is a maximum clique in the graph. For any subset define the weight of s to be the maximum weight clique problem asks for the clique of maximum weight. In this section we present a number of typical examples of problems with their corresponding. The maximum clique problems have been widely applied in the field of operations research. An introduction 2 an integer programming model is one where one or more of the decision variables has to take on an integer value in the final solution solving an integer programming problem is much more difficult than solving an lp problem even the fastest computers can take an excessively long time to solve big integer. Maximum clique problem linear programming graph theory. May 26, 2015 finding complete subgraphs in a graph, that is, cliques, is a key problem and has many realworld applications, e. Csc373 lecture notes department of computer science. Integer programming is a combinatorial optimization problem. This paper presents an integer programming approach to the maximum clique problem.
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